Murat Cokol: search on Z-Library

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1

Emergent behavior of growing knowledge about molecular interactions

Cokol, Murat, Iossifov, Ivan, Weinreb, Chani, Rzhetsky, Andrey

Journal:

Nature Biotechnology

Year:

2005

Language:

english

File:

PDF, 676 KB

english, 2005

2

How many scientific papers should be retracted?

Cokol, Murat, Iossifov, Ivan, Rodriguez-Esteban, Raul, Rzhetsky, Andrey

Journal:

Year:

2007

Language:

english

File:

PDF, 123 KB

english, 2007

3

Response by Cokol et al

Cokol, Murat, Iossifov, Ivan, Rodriguez-Esteban, Raul, Rzhetsky, Andrey

Journal:

Year:

2007

Language:

english

File:

PDF, 77 KB

english, 2007

4

Retraction rates are on the rise

Cokol, Murat, Ozbay, Fatih, Rodriguez-Esteban, Raul

Journal:

Year:

2008

Language:

english

File:

PDF, 89 KB

english, 2008

5

Visualizing evolution and impact of biomedical fields

Murat Cokol, Raul Rodriguez-Esteban

Journal:

Journal of Biomedical Informatics

Year:

2008

Language:

english

File:

PDF, 368 KB

english, 2008

6

Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor-α

Ceyhan Ceran, Murat Cokol, Sultan Cingoz, Ipek Tasan, Mehmet Ozturk, Tamer Yagci

Journal:

Year:

2012

Language:

english

File:

PDF, 890 KB

english, 2012

7

A recipe for high impact

Murat Cokol, Raul Rodriguez-Esteban, Andrey Rzhetsky

Journal:

Year:

2007

Language:

english

File:

PDF, 580 KB

english, 2007

8

Large-Scale Identification and Analysis of Suppressive Drug Interactions

Cokol, Murat, Weinstein, Zohar B., Yilancioglu, Kaan, Tasan, Murat, Doak, Allison, Cansever, Dilay, Mutlu, Beste, Li, Siyang, Rodriguez-Esteban, Raul, Akhmedov, Murodzhon, Guvenek, Aysegul, Cokol, Mel

Journal:

Chemistry & Biology

Year:

2014

Language:

english

File:

PDF, 1.96 MB

english, 2014

9

Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity

Yilancioglu, Kaan, Weinstein, Zohar B., Meydan, Cem, Akhmetov, Azat, Toprak, Isil, Durmaz, Arda, Iossifov, Ivan, Kazan, Hilal, Roth, Frederick P., Cokol, Murat

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 2.57 MB

english, 2014

10

A drug similarity network for understanding drug mechanism of action

Karabulut, Nermin Pinar, Akhmedov, Murodzhon, Cokol, Murat

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2014

Language:

english

File:

PDF, 392 KB

english, 2014

11

Modelling of compound combination effects and applications to efficacy and toxicity: state-of-the-art, challenges and perspectives

Bulusu, Krishna C., Guha, Rajarshi, Mason, Daniel J., Lewis, Richard P.I., Muratov, Eugene, Kalantar Motamedi, Yasaman, Cokol, Murat, Bender, Andreas

Journal:

Drug Discovery Today

Year:

2016

Language:

english

File:

PDF, 749 KB

english, 2016

12

Temporal and intrinsic factors of rifampicin tolerance in mycobacteria

Richardson, Kirill, Bennion, Owen T., Tan, Shumin, Hoang, Anh N., Cokol, Murat, Aldridge, Bree B.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 843 KB

english, 2016

13

Chemogenomics and orthology‐based design of antibiotic combination therapies

Chandrasekaran, Sriram, Cokol‐Cakmak, Melike, Sahin, Nil, Yilancioglu, Kaan, Kazan, Hilal, Collins, James J, Cokol, Murat

Journal:

Molecular Systems Biology

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

14

Prediction of Antibiotic Interactions Using Descriptors Derived from Molecular Structure

Mason, Daniel J., Stott, Ian, Ashenden, Stephanie, Weinstein, Zohar B., Karakoc, Idil, Meral, Selin, Kuru, Nurdan, Bender, Andreas, Cokol, Murat

Journal:

Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 2.71 MB

english, 2017

15

Prediction of synergistic drug combinations

Weinstein, Zohar B., Bender, Andreas, Cokol, Murat

Journal:

Current Opinion in Systems Biology

Year:

2017

Language:

english

File:

PDF, 2.04 MB

english, 2017

16

Synthesis and characterization of amino acid-functionalized calcium phosphate nanoparticles for siRNA delivery

Bakan, Feray, Kara, Goknur, Cokol Cakmak, Melike, Cokol, Murat, Denkbas, Emir Baki

Journal:

Colloids and Surfaces B: Biointerfaces

Year:

2017

Language:

english

File:

PDF, 2.38 MB

english, 2017

17

Efficient measurement and factorization of high-order drug interactions in Mycobacterium tuberculosis

Cokol, Murat, Kuru, Nurdan, Bicak, Ece, Larkins-Ford, Jonah, Aldridge, Bree B.

Journal:

Science Advances

Year:

2017

Language:

english

File:

PDF, 941 KB

english, 2017

18

A Parallel Adder Coordinates Mycobacterial Cell-Cycle Progression and Cell-Size Homeostasis in the Context of Asymmetric Growth and Organization

Logsdon, Michelle M., Ho, Po-Yi, Papavinasasundaram, Kadamba, Richardson, Kirill, Cokol, Murat, Sassetti, Christopher M., Amir, Ariel, Aldridge, Bree B.

Journal:

Current Biology

Year:

2017

Language:

english

File:

PDF, 1.93 MB

english, 2017

19

Diagonal Method to Measure Synergy Among Any Number of Drugs

Cokol-Cakmak, Melike, Bakan, Feray, Cetiner, Selim, Cokol, Murat

Journal:

Journal of Visualized Experiments

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

20

Modeling the impact of drug interactions on therapeutic selectivity

Weinstein, Zohar B., Kuru, Nurdan, Kiriakov, Szilvia, Palmer, Adam C., Khalil, Ahmad S., Clemons, Paul A., Zaman, Muhammad H., Roth, Frederick P., Cokol, Murat

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.71 MB

english, 2018

21

Synergistic activity of vorinostat combined with gefitinib but not with sorafenib in mutant KRAS human non-small cell lung cancers and hepatocarcinoma

Jeannot, Victor, Busser, Benoit, Vanwonterghem, Laetitia, Michallet, Sophie, Ferroudj, Sana, Cokol, Murat, Coll, Jean-Luc, Ozturk, Mehmet, Hurbin, Amandine

Journal:

OncoTargets and Therapy

Year:

2016

Language:

english

File:

PDF, 4.50 MB

english, 2016

22

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions

Katzir, Itay, Cokol, Murat, Aldridge, Bree B., Alon, Uri, Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.00 MB

2019

23

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions

Katzir, Itay, Cokol, Murat, Aldridge, Bree B., Alon, Uri, Regoes, Roland R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.00 MB

english, 2019

24

Design of high-order antibiotic combinations against M. tuberculosis by ranking and exclusion

Yilancioglu, Kaan, Cokol, Murat

Journal:

Scientific Reports

Year:

2019

File:

PDF, 2.51 MB

2019

25

Guided screen for synergistic three-drug combinations

Cokol-Cakmak, Melike, Cetiner, Selim, Erdem, Nurdan, Bakan, Feray, Cokol, Murat, Quintas, Luis Eduardo M

Journal:

Year:

2020

File:

PDF, 1.35 MB

2020

26

Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope

Geisinger, Edward, Mortman, Nadav J., Dai, Yunfei, Cokol, Murat, Syal, Sapna, Farinha, Andrew, Fisher, Delaney G., Tang, Amy Y., Lazinski, David W., Wood, Stephen, Anthony, Jon, van Opijnen, Tim, Isbe

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.50 MB

2020

27

Silencing of survivin and cyclin B1 through siRNA-loaded arginine modified calcium phosphate nanoparticles for non-small-cell lung cancer therapy

Kara, Goknur, Parlar, Ayhan, Cakmak, Melike Cokol, Cokol, Murat, Denkbas, Emir Baki, Bakan, Feray

Journal:

Colloids and Surfaces B: Biointerfaces

Year:

2020

File:

PDF, 5.22 MB

2020

28

Author Correction: Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope

Geisinger, Edward, Mortman, Nadav J., Dai, Yunfei, Cokol, Murat, Syal, Sapna, Farinha, Andrew, Fisher, Delaney G., Tang, Amy Y., Lazinski, David W., Wood, Stephen, Anthony, Jon, van Opijnen, Tim, Isbe

Journal:

Nature Communications

Year:

2020

File:

PDF, 385 KB

2020